Jonathan Germain, 22, allegedly stole $24,270 in cash tolls by replacing them with counterfeit bills.
The victims had been throwing things at the suspect's car outside a Red Hook motel, a source said.
The Brooklyn Bridge's Manhattan-bound lanes will close from early Saturday through Monday morning.
The tunnel will open to car and bus traffic in both directions starting 6 a.m. Nov. 19, 2012.
The Hugh L. Carey Brooklyn-Battery Tunnel was severely flooded during Hurricane Sandy.
Residents and workers reported extensive damage as floodwaters began to recede.
Most of the FDR Drive was also closed Monday because of the storm.
The Brooklyn-Battery Tunnel was renamed in honor of the two-term governor and former congressman.
The 11th annual Tunnel to Towers run honors firefighter Stephen Siller, who died on 9/11.
MTA officers caught Mark Beniquez, 34, after he fled a routine traffic stop May 8, 2012.
There will be construction on Brooklyn Bridge ramps and the 7 train will not run between Queens and Manhattan.
The Brooklyn-Battery Tunnel connecting lower Manhattan to Red Hook will close half its lanes over three weekends starting Nov. 11, the MTA said.
Thousands came out Sunday for the 10th Annual Tunnel to Towers Run to honor Firefighter Stephen Siller, who died on 9/11.
A number of streets and pedestrian routes are expected to be closed over the weekend for the 9/11 Anniversary.
Multiple road and tunnel projects will affect commuters in Manhattan for several days starting Saturday.
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