The stations would be near Co-op City, Morris Park, Parkchester and Hunts Point.
NJ Transit commuters faced delays of up to 30 minutes Wednesday morning.
Work is scheduled along the 1, 2, 4, 5, 6, A, C, E, F, G, N, R and S lines.
The 1, 2, 4, 5, 6, 7, A, C, D, F, N, Q, R and S lines will be impacted by MTA work.
Construction will cause changes on the 4, 5, 6, 7, A, C, F, Q and S lines.
Normal service was restored to subway lines that experienced delays Monday morning.
The MTA reported delays on a host of trains during Tuesday's commute.
Costs for the project could top $10 billion and be delayed until 2021, the Wall Street Journal reports.
More than a foot of snow fell on parts of the city, the National Weather Service said.
A fire on the tracks in the Canal Street station disrupted Thursday morning's commute, the MTA said.
Closures and service changes will hit 11 train lines this weekend.
The 1, 2, 3, A, C, E, L, N, Q and R trains will all have service changes.
Southbound A trains were running on F lines in Lower Manhattan, the MTA said.
The MTA expected service disruptions along 17 subway lines through the weekend.
Subway repair work will knock out A train service to most of Washington Heights and Inwood next week.
Get Our Daily New York Newsletter
Thank you for signing up!
Would you like to sign up for additional newsletters?
Thank you for signing up for additional newsletters.