A rescue train was sent to pull the stalled train back to safety, officials said.
Power briefly went out in a tube leading to the station, officials said.
Amtrak and NJ Transit trains suffered extensive delays Tuesday morning, officials said.
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The buses collided in the tunnel about 8:30 a.m., officials said.
LIRR trains were delayed 20 to 30 minutes and NJ Transit was delayed by up to an hour.
NJ Transit commuters faced delays of up to 30 minutes Wednesday morning.
An Amtrak power outage stalled their own trains and New Jersey Transit lines, officials said.
Normal service was restored to subway lines that experienced delays Monday morning.
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The rail agencies won't let straphangers bring alcohol onto its trains Saturday afternoon through Sunday.
LIRR administrators opted for the booze ban "based on experience," a spokesman said.
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Airports reported flight disruptions and NJ Transit announced that it will cross-honor tickets Friday.
Plans to improve the station include the installation of skylights, a new elevator and uniform signage.
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