Jacob's Pickles was closed by the department this week after getting dinged with 106 violation points.
The Health Department shut down the cafe after finding health code violations Monday.
The restaurant flunked its inspection on Wednesday because of a fly infestation, records show.
District Council 37 said the city has too few inspectors to cover the 11,300 licensed day care centers.
The restaurant was closed last week by the Health Department because of severe pest infestation.
Inspectors hit the restaurant with 46 health violation points.
The ice cream shop on Lexington Avenue and 60th Street was shuttered on July 9, the DOH said.
Of 18 children who have whooping cough, 12 did not have the proper vaccines.
A recent Health Department inspection found unsanitary conditions in the church's food pantry.
The number of Health Department closures marked a 25 percent decrease from 2013, the agency said.
The Amsterdam Avenue outpost had evidence of mice and roach in the kitchen, according to the city DOH.
After the death of a bather and the shutdown of another spa location, an official wants more oversight.
The spa was operating without a permit or an approved safety plan, the department said.
Alexander and Emma were most popular in Manhattan, while David and Esther topped the list in Brooklyn.
The Health Department recorded 64 violation points during a Monday inspection.
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