The 5, 6, A, D, E, J and Rockaway Shuttle will be affected.
The 6, A, D, F, G, J, M, Q, N, R, Rockaway and Franklin Avenue shuttle will all be affected.
The increase is part of the Biggert-Waters Act, a bill passed in July 2012.
Home prices were up 13 percent in the Rockaways compared to last year.
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